Getting Started with NumPyro

API and Developer Reference

Pyro Primitives
Distributions
Inference
Effect Handlers
Contributed Code
Change Log

Introductory Tutorials

Bayesian Regression Using NumPyro
Bayesian Hierarchical Linear Regression
Example: Baseball Batting Average
Example: Variational Autoencoder
Example: Neal’s Funnel
Example: Stochastic Volatility
Example: ProdLDA with Flax and Haiku
Variationally Inferred Parameterization
Automatic rendering of NumPyro models
Bad posterior geometry and how to deal with it
Truncated and folded distributions
Bayesian Censoring Data Modeling
Hilbert Space Approximation Gaussian Process Module
NumPyro Integration with Other Libraries
Fast Gaussian Process Inference Using Circulant Normal Distributions
NNX and NumPyro Integration

Discrete Latent Variables

Gaussian Mixture Model
Example: Toy Mixture Model with Discrete Enumeration
Example: Bayesian Models of Annotation
Example: Enumerate Hidden Markov Model
Example: CJS Capture-Recapture Model for Ecological Data
Example: Nested Sampling for Gaussian Shells
Bayesian Imputation for Missing Values in Discrete Covariates

Applications

Time Series Forecasting
Ordinal Regression
Bayesian Imputation
Example: Gaussian Process
Example: Bayesian Neural Network
Example: AutoDAIS
Example: Sparse Regression
Example: Horseshoe Regression
Example: Proportion Test
Example: Generalized Linear Mixed Models
Example: Hidden Markov Model
Example: Hilbert space approximation for Gaussian processes.
Example: Hilbert space approximation for Gaussian processes (multidimensional)
Example: Predator-Prey Model
Solving differential equations (ODEs) for multiple initial conditions.
Example: Neural Transport
Example: Thompson sampling for Bayesian Optimization with GPs
Bayesian Hierarchical Stacking: Well Switching Case Study
Example: Sine-skewed sine (bivariate von Mises) mixture
Example: AR2 process
Example: Holt-Winters Exponential Smoothing
Example: Modelling mortality over space and time
Example: Zero-Inflated Poisson regression model
Example: Conditional Variational Autoencoder in Flax
Text-Based Ideal Points using NumPyro
Example: VAR(2) process
Hierarchical Forecasting
Bayesian CUPED

Other Inference Algorithms

Example: MCMC Methods for Tall Data
Example: Hamiltonian Monte Carlo with Energy Conserving Subsampling
Example: Bayesian Neural Network with SteinVI
Example: Deep Markov Model inferred using SteinVI

NumPyro

Inference
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Inference

Markov Chain Monte Carlo (MCMC)
Stochastic Variational Inference (SVI)
Automatic Guide Generation
Reparameterizers
Funsor-based NumPyro
Optimizers
Diagnostics
Runtime Utilities
Inference Utilities
Visualization Utilities

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